PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016470748.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 303aa    MW: 34119.5 Da    PI: 8.0597
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016470748.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31048.1e-3339144199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k ltpsdv+k++rlv+pk++ae+h       + + e+++ l +ede g+ W+++++y+++s++yvltkGW++Fvk+++L++gDfv+F++++ +
  XP_016470748.1  39 FEKPLTPSDVGKLNRLVIPKQHAEKHfplngtqNDSGEKGFLLNFEDELGKLWTFRYSYWNSSQSYVLTKGWSRFVKEKKLDAGDFVLFERHRLD 133
                     99***************************999844445899*************************************************75448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + + +++++r+
  XP_016470748.1 134 GDRTFIGWRRR 144
                     88899999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-4030148IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-3135142IPR015300DNA-binding pseudobarrel domain
CDDcd100179.42E-3137134No hitNo description
SMARTSM010191.6E-2639145IPR003340B3 DNA binding domain
PROSITE profilePS5086314.00139145IPR003340B3 DNA binding domain
PfamPF023626.2E-3039145IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MESTRKSSSP TYKNQTTPTS LCPNSNRLEE NEIPKERLFE KPLTPSDVGK LNRLVIPKQH  60
AEKHFPLNGT QNDSGEKGFL LNFEDELGKL WTFRYSYWNS SQSYVLTKGW SRFVKEKKLD  120
AGDFVLFERH RLDGDRTFIG WRRRNAAAGA TVLEQESGIA PPGGGGGGWG QVYYGGSGHP  180
YPSAGVPYQP DCLHAVRRTM HNQTAANGNN TRRQVRLFGV NLAECEVDES LWSEPSTSDG  240
SSTPSHHQQS HEYQGQAGQL HYQYQVHCSN PSAPASSHAK NNHHNNMDVD YSRDMNHMRY  300
HQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-453614711120DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016470748.10.0PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ22e-64Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLM1CQ491e-121M1CQ49_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000723541e-121(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.12e-65B3 family protein